PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.11793s0058.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family S1Fa-like
Protein Properties Length: 77aa    MW: 8252.96 Da    PI: 10.608
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.11793s0058.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA132.31.3e-41876270
                  S1FA  2 avakveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
                          ++a++eakGlnPGlivllvvg +l+vfl++ny+lyvyaqknlPPrkkkP skkklkreklkqGv+vPGe
  Bostr.11793s0058.1.p  8 GKAAAEAKGLNPGLIVLLVVGIPLIVFLIANYVLYVYAQKNLPPRKKKPPSKKKLKREKLKQGVPVPGE 76
                          57899***************************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046892.1E-361276IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 77 aa     Download sequence    Send to blast
MDDDGFAGKA AAEAKGLNPG LIVLLVVGIP LIVFLIANYV LYVYAQKNLP PRKKKPPSKK  60
KLKREKLKQG VPVPGE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3701763e-95AF370176.1 Arabidopsis thaliana unknown protein (At3g53370) mRNA, complete cds.
GenBankAY0591363e-95AY059136.1 Arabidopsis thaliana unknown protein (At3g53370) mRNA, complete cds.
GenBankAY0888453e-95AY088845.1 Arabidopsis thaliana clone 97045 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013600217.14e-23PREDICTED: DNA-binding protein S1FA1
RefseqXP_013730236.14e-23PREDICTED: DNA-binding protein S1FA1-like
SwissprotQ423375e-24S1FA2_ARATH; DNA-binding protein S1FA2
TrEMBLA0A078J2Z05e-23A0A078J2Z0_BRANA; BnaCnng30990D protein
STRINGAT2G37120.11e-21(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28232769